nens=run.par.nensmax; % Number of ensembles to provide for.
   nd=run.par.ndmax; % Number of depth bins to provide for.
   ntran=jtran2-jtran1+1; % Number of transects.

run.par		structure of parameters
run.goodtran(ntran)	Flag for good transects (good = 1, bad = 0).
run.cs20	structure of data from cr10 data logger
% vw(5) = vx, vy, vz, verr, vprojected
run.vp(nd,nens,ntran)
run.WNmax(nens,ntran)
run.vflag(nens,ntran)
run.dist(nens,ntran)	distance from west end of transect, projected onto line
			from west end to east end
run.pstsec(nens,ntran)
run.pstsecav(ntran)
run.xens(3,nens,ntran)	x,y,z of boat relative to first ensemble; 
run.BTV(4,nens,ntran)	velocity of the boat
run.verav
run.verrms
run.depth(WNmxmxmx,ntran) depths corresponding to the water bins.
run.dbot(nens,ntran)	distance to bottom
run.WNmaxmax(ntran)	max. number of depth bins in a transect
run.nens(ntran)		number of ensembles in the transect
run.madegood(ntran)	distance (in 3 dimensions) from first to last point
run.ntran		number of transects in the run
run.WNmxmxmx		max. number of depth bins in the run
run.nensmax		max. number of ensemblse for any transect in the run
run.hcs
run.vcs
run.madegdmx
run.ens
run.tran
run.vpav
run.vpavav
run.vavcen(ngdtran)	Average velocity over the transect.
run.nbin(ngdtran)		Number of bins used to calculate vavcen.
run.vavfull(ngdtran)	Average velocity including missing ends.
run.vaveast(ngdtran)	Average velocity for missing east end.
run.vavwest(ngdtran)	Average velocity for missing west end.
run.vavedge(ngdtran)	vaveast + vavwest
run.vavuvm(ngdtran)	Average velocity along UVM path.
run.vavtran(ngdtran)	Transect number for this good transect.
run.vavtsec(ngdtran)	Time for this good transect.

run.vavhcs
run.vavvcs
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